长链非编码RNA在畜禽经济性状中的研究进展

doi:10.11843/j.issn.0366-6964.2018.10.001

Abstract

Abstract:

Long noncoding RNAs(lncRNAs), a kind of noncoding RNA transcripts with the length more than 200 nucleotides, widely exists in cytoplasm and nuclei of animals, plants and microbes. Studies have shown that lncRNAs can regulate gene expression at chromosomal, transcriptional and post-transcriptional levels. lncRNA plays a vital role in most life processes in animals, such as reproduction, muscle growth, fat deposition, hair follicle development, mammary gland development and lactation. This paper reviews the regulation mechanism and current research status of lncRNAs in livestock economic traits, which would provide theoretical basis and practical reference for the research and application of lncRNAs in animal husbandry.

CLC Number:

S813.1

YANG Bing, LI Xiao-feng, WANG Xin. Research Progress of Long Noncoding RNA in Economic Traits of Livestock[J]. ACTA VETERINARIA ET ZOOTECHNICA SINICA, 2018, 49(10): 2063-2069.

0
/ / Recommend

Add to citation manager EndNote|Reference Manager|ProCite|BibTeX|RefWorks

URL: https://www.xmsyxb.com/EN/10.11843/j.issn.0366-6964.2018.10.001

https://www.xmsyxb.com/EN/Y2018/V49/I10/2063

References

[1] MATTICK J S.RNA regulation:a new genetics?[J].Nat Rev Genet,2004,5(4):316-323.
[2] BIRNEY E,STAMATOYANNOPOULOS J A, DUTTA A, et al.Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project[J].Nature,2007,447(7146):799-816.
[3] SPIZZO R,ALMEIDA M I,COLOMBATTI A,et al.Long non-coding RNAs and cancer:A new frontier of translational research[J].Oncogene,2012,31(43):4577-4587.
[4] GUTTMAN M,RINN J L.Modular regulatory principles of large non-coding RNAs[J].Nature,2012,482(7385):339-346.
[5] ULITSKY I,SHKUMATAVA A,JAN C H,et al.Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution[J].Cell,2011,147(7):1537-1550.
[6] KNOWLING S,MORRIS K V.Non-coding RNA and antisense RNA.Nature's trash or treasure?[J].Biochimie,2011,93(11):1922-1927.
[7] QIN Y,SUN W,ZHANG H,et al.LncRNA GAS8-AS1 inhibits cell proliferation through ATG5-mediated autophagy in papillary thyroid cancer[J].Endocrine,2018,59(3):555-564.
[8] LIU Y,SUN Z X,ZHU J Q,et al.LncRNA-TCONS_00034812 in cell proliferation and apoptosis of pulmonary artery smooth muscle cells and its mechanism[J].J Cell Physiol,2018,233(6):4801-4814.
[9] TOUAT-TODESCHINI L,SHICHINO Y,DANGIN M,et al.Selective termination of lncRNA transcription promotes heterochromatin silencing and cell differentiation[J].EMBO J,2017,36(17):2626-2641.
[10] SONG G X,SHEN Y H,RUAN Z B,et al.LncRNA-uc.167 influences cell proliferation,apoptosis and differentiation of P19 cells by regulating Mef2c[J].Gene,2016,590(1):97-108.
[11] NAN A R,JIA Y Y,LI X,et al.Editor's highlight:LncRNAL20992 regulates apoptotic proteins to promote lead-induced neuronal apoptosis[J].Toxicol Sci,2018,161(1):115-124.
[12] LIU W F,LIU X X,LUO M L,et al.dNK derived IFN-γ mediates VSMC migration and apoptosis via the induction of LncRNA MEG3:A role in uterovascular transformation[J].Placenta,2017,50:32-39.
[13] WANG L J,ZHAO Y,BAO X C,et al.LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration[J].Cell Res,2015,25(3):335-350.
[14] WANG J,HUA L S,CHEN J F,et al.Identification and characterization of long non-coding RNAs in subcutaneous adipose tissue from castrated and intact full-sib pair Huainan male pigs[J].BMC Genomcis,2017,18(1):542.
[15] YU S,ZHAO Y,LAI F N,et al.LncRNA as ceRNAs may be involved in lactation process[J].Oncotarget,2017,8(58):98014-98028.
[16] WANG H,CAO Q Y,GE J,et al.LncRNA-regulated infection and inflammation pathways associated with pregnancy loss:Genome wide differential expression of lncRNAs in early spontaneous abortion[J].Am J Reprod Immunol,2014,72(4):359-375.
[17] ZHOU M,ZHANG Z Y,ZHAO H Q,et al.An immune-related six-lncRNA signature to improve prognosis prediction of glioblastoma multiforme[J].Mol Neurobiol,2018,55(5):3684-3697.
[18] RINN J L,CHANG H Y.Genome regulation by long noncoding RNAs[J].Annu Rev Biochem,2012,81:145-166.
[19] KOPP F,MENDELL J T.Functional classification and experimental dissection of long noncoding RNAs[J].Cell,2018,172(3):393-407.
[20] LU Y J,LIU X,XIE M H,et al.The NF-κB-responsive long noncoding RNA FIRRE regulates posttranscriptional regulation of inflammatory gene expression through interacting with hnRNPU[J].J Immunol,2017,199(10):3571-3582.
[21] NISHIKAWA K,KINJO A R.Essential role of long non-coding RNAs in de novo chromatin modifications:The genomic address code hypothesis[J].Biophys Rev,2017,9(2):73-77.
[22] BÖHMDORFER G,WIERZBICKI A T.Control of chromatin structure by long noncoding RNA[J].Trends Cell Biol,2015,25(10):623-632.
[23] FROBERG J E,YANG L,LEE J T.Guided by RNAs:X-inactivation as a model for lncRNA function[J].J Mol Biol,2013,425(19):3698-3706.
[24] TSAI M C,MANOR O,WAN Y,et al.Long noncoding RNA as modular scaffold of histone modification complexes[J].Science,2010,329(5992):689-693.
[25] DERRIEN T,JOHNSON R,BUSSOTTI G,et al.The GENCODE v7 catalog of human long noncoding RNAs:Analysis of their gene structure,evolution,and expression[J].Genome Res,2012,22(9):1775-1789.
[26] BEERMANN J,PICCOLI M T,VIERECK J,et al.Non-coding RNAs in development and disease:Background,mechanisms,and therapeutic approaches[J].Physiol Rev,2016,96(4):1297-1325.
[27] MOUSAVI K,ZARE H,DELL'ORSO S,et al.eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci[J].Mol Cell,2013,51(5):606-617.
[28] RINN J L,KERTESZ M,WANG J K,et al.Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs[J].Cell,2007,129(7):1311-1323.
[29] LUO S,LU J Y,LIU L C,et al.Divergent lncRNAs regulate gene expression and lineage differentiation in pluripotent cells[J].Cell Stem Cell,2016,18(5):637-652.
[30] YU X H,ZHANG Y,LI T T,et al.Long non-coding RNA linc-RAM enhances myogenic differentiation by interacting with MyoD[J].Nat Commun,2017,8:14016.
[31] SU D N,WU S P,CHEN H T,et al.HOTAIR,a long non-coding RNA driver of malignancy whose expression is activated by FOXC1,negatively regulates miRNA-1 in hepatocellular carcinoma[J].Oncol Lett,2016,12(5):4061-4067.
[32] SUN X M,LI M X,SUN Y J,et al.The developmental transcriptome sequencing of bovine skeletal muscle reveals a long noncoding RNA,lncMD,promotes muscle differentiation by sponging miR-125b[J].Biochim Biophys Acta (BBA)-Mol Cell Res,2016,1863(11):2835-2845.
[33] LI J,CAO Y X,XU X F,et al.Increased new lncRNA-mRNA gene pair levels in human cumulus cells correlate with oocyte maturation and embryo development[J].Reprod Sci,2015,22(8):1008-1014.
[34] ANGUERA M C,MA W Y,CLIFT D,et al.Tsx produces a long noncoding RNA and has general functions in the germline,stem cells,and brain[J].PLoS Genet,2011,7(9):e1002248.
[35] ZHENG G Q,DAHL J A,NIU Y M,et al.ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility[J].Mol Cell,2013,49(1):18-29.
[36] NAKAGAWA S,SHIMADA M,YANAKA K,et al.The lncRNA Neat1 is required for corpus luteum formation and the establishment of pregnancy in a subpopulation of mice[J].Development,2014,141(23):4618-4627.
[37] LI W B,NOTANI D,MA Q,et al.Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation[J].Nature,2013,498(7455):516-520.
[38] DURRUTHY-DURRUTHY J,SEBASTIANO V,WOSSIDLO M,et al.The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming[J].Nat Genet,2016,48(1):44-52.
[39] MULVEY B B,OLCESE U,CABRERA J R,et al.An interactive network of long non-coding RNAs facilitates the Drosophila sex determination decision[J].Biochim Biophys Acta (BBA)-Gene Regul Mech,2014,1839(9):773-784.
[40] 郭芹芹,李凤,孙尉峻,等.牛体外受精胚胎抗氧化相关的长链非编码RNA表达谱[J].畜牧兽医学报,2017,48(7):1229-1240.
GUO Q Q,LI F,SUN W J,et al.Long non-coding RNA profiling in bovine embryos treated with glutathione during in vitro culture[J].Acta Veterinaria et Zootechnica Sinica,2017,48(7):1229-1240.(in Chinese)
[41] ROESZLER K N,ITMAN C,SINCLAIR A H,et al.The long non-coding RNA,MHM,plays a role in chicken embryonic development,including gonadogenesis[J].Dev Biol,2012,366(2):317-326.
[42] BOULANGER L,PANNETIER M,GALL L,et al.FOXL2 is a female sex-determining gene in the goat[J].Curr Biol,2014,24(4):404-408.
[43] CABALLERO J,GILBERT I,FOURNIER E,et al.Exploring the function of long non-coding RNA in the development of bovine early embryos[J].Reprod Fertil Dev,2014,27(1):40-52.
[44] WANG Y Y,XUE S Y,LIU X R,et al.Analyses of long non-coding RNA and mRNA profiling using RNA sequencing during the pre-implantation phases in pig endometrium[J].Sci Rep,2016,6(1):20238.
[45] GUO Y W,WANG J N,ZHU M F,et al.Identification of MyoD-responsive transcripts reveals a novel long non-coding RNA (lncRNA-AK143003) that negatively regulates myoblast differentiation[J].Sci Rep,2017,7(1):2828.
[46] XU X C,JI S Y,LI W L,et al.LncRNA H19 promotes the differentiation of bovine skeletal muscle satellite cells by suppressing Sirt1/FoxO1[J].Cell Mol Biol Lett,2017,22(1):10.
[47] YUE Y W,JIN C F,CHEN M M,et al.A lncRNA promotes myoblast proliferation by up-regulating GH1[J].In vitro Cell Dev Biol-Anim,2017,53(8):699-705.
[48] JIN C F,LI Y,DING X B,et al.lnc133b,a novel,long non-coding RNA,regulates bovine skeletal muscle satellite cell proliferation and differentiation by mediating miR-133b[J].Gene,2017,630:35-43.
[49] XING B S,BAI X X,GUO H X,et al.Long non-coding RNA analysis of muscular responses to testosterone deficiency in Huainan male pigs[J].Anim Sci J,2017,88(9):1451-1456.
[50] CHAO T L,JI Z B,HOU L,et al.Sheep skeletal muscle transcriptome analysis reveals muscle growth regulatory lncRNAs[J].PeerJ,2018,6:e4619.
[51] 郑竹清,杜琛,付绍印,等.山羊肌内脂肪细胞lncRNA鉴别及特征分析[J].畜牧兽医学报,2014,45(12):1924-1931.
ZHENG Z Q,DU C,FU S Y,et al.Identification and characterization analysis of long non-coding rNA from RNA-seq data of intramuscular adipocytes in goats[J].Acta Veterinaria et Zootechnica Sinica,2014,45(12):1924-1931.(in Chinese)
[52] LI M X,SUN X M,CAI H F,et al.Long non-coding RNA ADNCR suppresses adipogenic differentiation by targeting miR-204[J].Biochim Biophys Acta (BBA)-Gene Regul Mech,2016,1859(7):871-882.
[53] PANG W J,LIN L G,XIONG Y,et al.Knockdown of PU.1 AS lncRNA inhibits adipogenesis through enhancing PU.1 mRNA translation[J].J Cell Biochem,2013,114(11):2500-2512.
[54] ZHANG T,ZHANG X Q,HAN K P,et al.Genome-wide analysis of lncRNA and mRNA expression during differentiation of abdominal preadipocytes in the chicken[J].G3(Bethesda),2017,7(3):953-966.
[55] YU L,TAI L N,ZHANG L F,et al.Comparative analyses of long non-coding RNA in lean and obese pigs[J].Oncotarget,2017,8(25):41440-41450.
[56] WANG S H,GE W,LUO Z X,et al.Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)[J].BMC Genomics,2017,18(1):767.
[57] STANDAERT L,ADRIAENS C,RADAELLI E,et al.The long noncoding RNA Neat1 is required for mammary gland development and lactation[J].RNA,2014,20(12):1844-1849.
[58] ZHANG Y S,XIA J X,LI Q L,et al.NRF2/long noncoding RNA ROR signaling regulates mammary stem cell expansion and protects against estrogen genotoxicity[J].J Biol Chem,2014,289(45):31310-31318.
[59] TONG C,CHEN Q L,ZHAO L L,et al.Identification and characterization of long intergenic noncoding RNAs in bovine mammary glands[J].BMC Genomics,2017,18:468.
[60] FAN Y H,WU M J,JIANG Y,et al.Long non-coding RNA HULC as a potential prognostic biomarker in human cancers:A meta-analysis[J].Oncotarget,2017,8(13):21410-21417.
[61] MA Q M,LI L Y,TANG Y,et al.Analyses of long non-coding RNAs and mRNA profiling through RNA sequencing of MDBK cells at different stages of bovine viral diarrhea virus infection[J].Res Vet Sci,2017,115:508-516.

Research Progress of Long Noncoding RNA in Economic Traits of Livestock

PDF (PC)

Knowledge

Abstract

Cite this article

share this article

References

Related Articles 15

Recommended Articles

Metrics

Comments

[1]	LI Chao, ZHAO Xueyan, WANG Yongjun, WANG Yanping, REN Yifan, LI Jingxuan, WANG Huaizhong, WANG Jiying, SONG Qinye. Analysis on the Structural Composition and Function of Bacterial Microbiota of Caecum and Colon in Laiwu and DLY pigs [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(12): 5033-5045.
[2]	GUO Yanli, LI Keqiang, BAI Shaochuan, WANG Tao, WANG Dehe, WANG Qi, LI Lanhui. The Structure, Activity Regulation of ALV-E and Its Effects on Host Function [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(7): 2683-2691.
[3]	WANG Kaiming, YU Zonggang, XU Xueli, AI Nini, LI Xintong, HE Jun, TAO Deng, ZHANG Shuo, MA Haiming, ZHANG Yuebo. Effect of Interfering Mtmr3 on C2C12 Cells Proliferation and Differentiation [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(4): 1478-1489.
[4]	YANG Xiaogeng, ZHANG Huizhu, LI Jian, XIANG Hua, HE Honghong. Research Progress of the DNA Methylation in Mammalian Oocyte and Early Embryo Development [J]. Acta Veterinaria et Zootechnica Sinica, 2023, 54(2): 443-450.
[5]	LIU Jiqiang, HAO Xiaodong, WU Lina, LIAO Shiying, FENG Yifang, MI Shirong, LIU Shen, LIU Jian, ZHANG Longchao. Application of Whole Genome SNP Genotyping Technology in Livestock and Poultry Genetics and Breeding [J]. Acta Veterinaria et Zootechnica Sinica, 2022, 53(12): 4123-4137.
[6]	WANG Yong, WANG Huaidong, GUO Yongqing, YU Ying, WANG Chuduan, WANG Xiaoshuo. Comparison of Genome-wide Differential Methylation Regions in dsRNA and Aza-CdR Transfected Porcine Kidney Cells [J]. Acta Veterinaria et Zootechnica Sinica, 2022, 53(8): 2739-2750.
[7]	LIU Fangjun, LAN Wutao, MA Yueyue, LI Pengfei, ZHANG Lei, ZHU Zhiwei. Bioinformatics Analysis of miRNA-148a-3p and Detection of Its Expression Level in Different Tissues of Mice [J]. Acta Veterinaria et Zootechnica Sinica, 2022, 53(2): 414-422.
[8]	ZHANG Hailiang, CHANG Yao, LOU Wenqi, WANG Kai, CHEN Ziwei, MI Siyuan, WEN Wan, WANG Yachun. A Review on Novel Traits in Dairy Cattle Breeding [J]. Acta Veterinaria et Zootechnica Sinica, 2021, 52(10): 2687-2697.
[9]	YUE Yongqi, HUA Yonglin, XIONG Yan, LIN Yaqiu, XIONG Xianrong, LI Jian. Research Progress of microRNA Regulation on the Fat Deposition of Subcutaneous Adipose Tissue and Intramuscular Fat in Animals [J]. Acta Veterinaria et Zootechnica Sinica, 2021, 52(10): 2698-2709.
[10]	WANG Huan, ZOU Huiying, ZHU Huabin, ZHAO Shanjiang. Advances in Evaluation of Livestock Breeding New Materials by Using the CRISPR/Cas9 Gene Editing Technology [J]. Acta Veterinaria et Zootechnica Sinica, 2021, 52(4): 851-861.
[11]	LIU Xuexian, DU Bin, GUO Xiang, XUE Jixuan, YU Leitao, FAN Ruiwen. microRNA-146a Regulates the Proliferation and Migration of Alpaca Melanocytes by Targeting MAPK4 and Myosin Va Genes [J]. Acta Veterinaria et Zootechnica Sinica, 2021, 52(4): 967-975.
[12]	SONG Xingchao, LIU Linling, PAN Hongjun, ZHAO Jiaping, JIA Yun, YANG Fuhe, XU Chao. Cloning,SNPs Screening and mRNA Differential Expression Analysis of TYR Gene in Skin of Mink(Neovison vison) [J]. Acta Veterinaria et Zootechnica Sinica, 2021, 52(1): 66-76.
[13]	SHU Ze, WANG Lixian, WANG Ligang. Research Progress of Alternative Splicing and Its Application in Livestock and Poultry Breeding [J]. Acta Veterinaria et Zootechnica Sinica, 2020, 51(12): 2911-2920.
[14]	ZHANG Yi, BAI Hao, BI Yulin, LU Ao, HUANG Yanli, CHEN Guohong, CHANG Guobin. Research Progress of Copy Number Variation in Poultry Breeding [J]. Acta Veterinaria et Zootechnica Sinica, 2020, 51(11): 2633-2640.
[15]	SHAN Wenjuan, DAI Huiying, ZHANG Yucong. Classification and Genetic Diversity of Three Hare Species in Xinjiang Based on Mitochondrial DNA [J]. Acta Veterinaria et Zootechnica Sinica, 2020, 51(10): 2403-2412.